Highlighted publications

  1. Aguerralde-Martin M, Moldovan RA, Verdú M, Tarazona S MOREshiny: a user-friendly application for the inference of phenotype-specific multi-omic regulatory networks Bioinformatics Advances · 2026
  2. Salguero P, Buendía-Galera A, Tarazona S Coxmos: interpretable survival models for high-dimensional and multi-omic data BioData Mining · 2026
  3. Aguerralde-Martin M, Clemente-Císcar M, Conesa A, Tarazona S MORE interpretable multi-omic regulatory networks to characterise phenotypes Briefings in Bioinformatics · 2025
  4. Monzó C, Aguerralde-Martin M, Martínez-Mira C, Arzalluz-Luque Á, Conesa A, Tarazona S MOSim: bulk and single-cell multilayer regulatory network simulator Briefings in Bioinformatics · 2025
  5. Papoutsoglou G, Tarazona S, Lopes MB, et al. Machine learning approaches in microbiome research: challenges and best practices Frontiers in Microbiology · 2023
  6. Arzalluz-Luque Á, Salguero P, Tarazona S, Conesa A acorde unravels functionally interpretable networks of isoform co-usage from single cell data Nature Communications · 2022
  7. Ugidos M, Nueda MJ, Prats-Montalbán JM, Ferrer A, Conesa A, Tarazona S MultiBaC: an R package to remove batch effects in multi-omic experiments Bioinformatics · 2022
  8. Tarazona S, Carmona H, Conesa A, Llansola M, Felipo V A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats Cell Biology and Toxicology · 2021
  9. Tarazona S, Arzalluz-Luque Á, Conesa A Undisclosed, unmet and neglected challenges in multi-omics studies Nature Computational Science · 2021
  10. Ugidos M, Tarazona S, Prats-Montalbán JM, Ferrer A, Conesa A MultiBaC: a strategy to remove batch effects between different omic data types Statistical Methods in Medical Research · 2020
  11. Tarazona S, Bernabeu E, Carmona H, et al. A multiomics study to unravel the effects of developmental exposure to endosulfan in rats: molecular explanation for sex-dependent effects ACS Chemical Neuroscience · 2019
  12. Gómez-Cabrero D, Tarazona S, Ferreirós-Vidal I, et al. STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse Scientific Data · 2019
  13. Sánchez-Gaya V, Casaní-Galdón S, Ugidos M, et al., Tarazona S Elucidating the role of chromatin state and transcription factors on the regulation of the yeast metabolic cycle: a multi-omic integrative approach Frontiers in Genetics · 2018
  14. Hernández-de-Diego R, Tarazona S, Martínez-Mira C, et al. PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data Nucleic Acids Research · 2018
  15. Furió-Tarí P, Conesa A, Tarazona S RGmatch: matching genomic regions to proximal genes in omics data integration BMC Bioinformatics · 2016
  16. Tarazona S, Furió-Tarí P, Turrà D, et al. Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package Nucleic Acids Research · 2015
  17. Nueda MJ, Tarazona S, Conesa A Next maSigPro: updating maSigPro Bioconductor package for RNA-seq time series Bioinformatics · 2014
  18. Tarazona S, Prado-López S, Dopazo J, Ferrer A, Conesa A Variable selection for multifactorial genomic data Chemometrics and Intelligent Laboratory Systems · 2012
  19. Tarazona S, García-Alcalde F, Dopazo J, Ferrer A, Conesa A Differential expression in RNA-seq: a matter of depth Genome Research · 2011
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